05.07.2016| Alashkert FC - FC Santa Coloma 3-0 (1-0)
| | | | | 12. | 1-0 | Vahagn Minasyan
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| | | | 26. |  | Mihran Manasyan, Alashkert FC
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| | | | 60. | | Fernando Gonzalez, FC Santa Coloma
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| | | | 84. | 2-0 | Norayr Gyozalyan
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| | | | 88. | 3-0 | Artur Edigaryan
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| | | | 90. | | Cristian Martinez, FC Santa Coloma
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| | | | 90. | | Iban Parra, FC Santa Coloma
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| The New Saints videre til 2. kvalifikationsrunde med sammenlagt 5-1 |
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| 28.06.2016| The New Saints - Tre Penne 2-1 (2-1)
| 05.07.2016| Tre Penne - The New Saints 0-3 (0-1)
| | 13. | 1-0 | Scott Quigley | 45. | 0-1 | Scott Quigley
| | 16. | 1-1 | Stefano Fraternali | 47. | 0-2 | Aeron Edwards
| | 40. | 2-1 | Jamie Mullan | 90. | 0-3 | Greg Draper
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| | Valletta videre til 2. kvalifikationsrunde med sammenlagt 2-2 (flest udebanem�l) |
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| 28.06.2016| Valletta - B36 1-0 (0-0)
| 05.07.2016| B36 - Valletta 2-1 (1-1)
| | 69. | 1-0 | Federico Falcone | 11. | 1-0 | Hanus Thorleifsson
| | | | | 24. | 1-1 | Federico Falcone
| | | | | 66. | 2-1 | Hannes Agnarsson
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Forside