| Dinamo Bukarest til 2. runde med sammenlagt 7-2 | |
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| 28.09.1965 | Dinamo Bukarest - B1909 4-0 |
| | | 1-0 Gheorghe Ene (50) ; 2-0 Vasile Ghergheli (75) ; 3-0 Constantin Fratila (85) ; 4-0 Constantin Fratila (88) |
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| 06.10.1965 | B1909 - Dinamo Bukarest 2-3 (2-3) |
| | | 0-1 Radu Nunweiller (8) ; 0-2 Ion Pircalab (12) ; 1-2 Jørgen Petersen (29) ; 2-2 Arno Hansen (34) ; 2-3 Gherghe Ene (44) |
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| Werder Bremen til 2. runde med sammenlagt 10-0 | |
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| 06.10.1965 | Apoel Nicosia - Werder Bremen 0-5 (0-4) |
| | | 0-1 Klaus Matischak (14) ; 0-2 Manfred Podlich (32) ; 0-3 Klaus Matischak (33) ; 0-4 Hans Schulz (45) ; 0-5 Gerhard Zebrowski (77) |
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| 13.10.1965 | Werder Bremen - Apoel Nicosia 5-0 |
| | | 1-0 John Danielsen (31) ; 2-0 Diethelm Ferner (41) ; 3-0 John Danielsen (54) ; 4-0 Horst-Dieter Höttges (64) ; 5-0 Horst-Dieter Höttges, straffe (83) |
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| Kilmarnock til 2. runde med sammenlagt 1-0 | |
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| 08.09.1965 | 17 Nentori - Kilmarnock 0-0 | | 29.09.1965 | Kilmarnock - 17 Nentori 1-0 |
| 77. | 1-0 | Robert Black |
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| Levski Sofia til 2. runde med sammenlagt 7-2 | |
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| 12.09.1965 | Djurgården - Levski Sofia 2-1 |
| | | 0-1 Georgi Sokolov (8) ; 1-1 Hans Nilsson (40) ; 2-1 Hans Nilsson (63) |
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| 03.10.1965 | Levski Sofia - Djurgården 6-0 (4-0) |
| | | 1-0 Georgi Asparukhow (15) ; 2-0 Georgi Asparukhow (18) ; 3-0 Hristo Iliev (34) ; 4-0 Simeon Nikolov (35) ; 5-0 Hristo Iliev (47) ; 6-0 Stefan Abadzhiev (58) |
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| Vorwärts Berlin til 2. runde med sammenlagt 3-1 | |
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| 15.09.1965 | Drumcondra - Vorwärts Berlin 1-0 |
| 65. | 1-0 | James Morrissey |
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| 22.10.1965 | Vorwärts Berlin - Drumcondra 3-0 (1-0) |
| | | 1-0 Gerhard Vogt (22) ; 2-0 Horst Begerad (51) ; 3-0 Jürgen Piepenburg (68) |
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| Anderlecht til 2. runde med sammenlagt 5-1 | |
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| 08.09.1965 | Fenerbahce - Anderlecht 0-0 |
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| 15.09.1965 | Anderlecht - Fenerbahce 5-1 |
| | | 1-0 Paul van Himst (4) ; 2-0 Jacques Stockman (34) ; 3-0 Jacques Stockman (46) ; 4-0 Jacques Stockman (76) ; 4-1 Ögun Altiparmak (84) ; 5-1 Pierre Hanon (86) |
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| Real Madrid til 2. runde med sammenlagt 6-2 | |
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| 08.09.1965 | Feyenoord - Real Madrid 2-1 (0-1) |
| | | 0-1 Ferenc Puskas (34) ; 1-1 Hans Vanneker (75) ; 2-1 Piet Kruiver (85) |
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| 22.09.1965 | Real Madrid - Feyenoord 5-0 (4-0) |
| | | 1-0 Ferenc Puskas (10) ; 2-0 Ferenc Puskas (20) ; 3-0 Ferenc Puskas (34) ; 4-0 Ramon Grosso (44) ; 5-0 Ferenc Puskas (84) |
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| Manchester United til 2. runde med sammenlagt 9-2 | |
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| 22.09.1965 | HJK Helsinki - Manchester United 2-3 (1-3) |
| | | 0-1 David Herd (1) ; 0-2 John Connelly (15) ; 1-2 Kai Pahlman (31) ; 1-3 Denis Law (36) ; 2-3 Markku Peltoniemi (71) |
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| 06.10.1965 | Manchester United - HJK Helsinki 6-0 |
| | | 1-0 John Connelly (15) ; 2-0 George Best (44) ; 3-0 John Connelly (47) ; 4-0 George Best (52) ; 5-0 John Connelly (73) ; 6-0 Bobby Charlton (76) |
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| Ferencvaros til 2. runde med sammenlagt 13-2 | |
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| 29.08.1965 | Keflavik - Ferencvaros 1-4 (0-3) |
| | | 0-1 Lajos Nemeth (27) ; 0-2 Janos Karaba (37) ; 0-3 Zoltan Varga (38) ; 0-4 Florian Albert (57) ; 1-4 Runar Juliusson (67) |
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| 08.09.1965 | Ferencvaros - Keflavik 9-1 (6-1) |
| | | 1-0 Florian Albert (7) ; 2-0 Dezsö Novak (11) ; 3-0 Dezsö Novak (22) ; 4-0 Zoltan Varga (23) ; 5-0 Zoltan Varga (34) ; 5-1 Jon Johansson (36) ; 6-1 Florian Albert (45) ; 7-1 Florian Albert (77) ; 8-1 Florian Albert (82) ; 9-1 Florian Albert (89) |
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| Sparta Prag til 2. runde med sammenlagt 4-0 | |
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| 22.09.1965 | Lausanne Sports - Sparta Prag 0-0 |
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| 29.09.1965 | Sparta Prag - Lausanne Sports 4-0 |
| | | 1-0 Ivan Mraz (21) ; 2-0 Ivan Mraz (24) ; 3-0 Ivan Mraz (77) ; 4-0 Pavel Dyba (82) |
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| Gornik Zabrze til 2. runde med sammenlagt 5-2 | |
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| 15.09.1965 | LASK Linz - Gornik Zabrze 1-3 (0-2) |
| | | 0-1 Jerzy Musiack (19) ; 0-2 Erwin Wilczek (22) ; 0-3 Erwin Wilczek (53) ; 1-3 Helmut Köglberger (61) |
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| 22.10.1965 | Gornik Zabrze - LASK Linz 2-1 (2-1) |
| | | 1-0 Ernest Pol (8) ; 2-0 Zygfryd Szoctysik (22) ; 2-1 Luka Liposinovic, straffe (33) |
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| Derry City til 2. runde med sammenlagt 8-6 | |
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| 31.08.1965 | Lyn Oslo - Derry City 5-3 (3-3) |
| | | 1-0 Harald Berg (4) ; 1-1 Ron Wood (10) ; 2-1 Ole Dybwad-Olsen, straffe (19) ; 2-2 Bobby Gilbert (24) ; 3-2 Harald Berg (32) ; 3-3 Bobby Gilbert (34) ; 4-3 Ole Dybwad-Olsen (50) ; 5-3 Ole Stavrum (62) |
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| 09.09.1965 | Derry City - Lyn Oslo 5-1 (2-1) |
| | | 1-0 Joseph Wilson (3) ; 2-0 Joseph Wilson (17) ; 2-1 Ole Stavrum (44) ; 3-1 James Crossan (49) ; 4-1 Ron Wood (67) ; 5-1 James McGeough (71) |
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| Panathinaikos til 2. runde med sammenlagt 4-2 | |
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| 26.09.1965 | Panathinaikos - Sliema Wanderers 4-1 (3-1) |
| | | 1-0 Efstradios Sakelaridis (5) ; 2-0 Neotakis Lukanidis (18) ; 3-0 Dimitrios Domazos (32) ; 3-1 Joseph Cini (36) ; 4-1 Aristidis Kamaras (61) |
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| 10.10.1965 | Sliema Wanderers - Panathinaikos 1-0 |
| | | 1-0 Leli Micallef (30) |
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| Partizan Beograd til 2. runde med sammenlagt 4-2 | |
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| 22.09.1965 | Partizan Beograd - Nantes 2-0 |
| | | 1-0 Milan Galic (37) ; 2-0 Mustafa Hasanagic (48) |
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| 13.10.1965 | Nantes - Partizan Beograd 2-2 |
| | | 1-0 Francis Magny (32) ; 1-1 Vladimir Kovacevic (42) ; 1-2 Milan Galic (48) ; 2-2 Bernhard Blanchet (65) |
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| Benfica til 2. runde med sammenlagt 18-0 | |
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| 30.09.1965 | Stade Dudelange - Benfica 0-8 (0-3) |
| | | 0-1 Jose Maria Pedras (15) ; 0-2 Jose Maria Pedras (21) ; 0-3 Manuel Serafim (29) ; 0-4 Selvmål, Ernest Brenner (46) ; 0-5 Antonio Yauca (59) ; 0-6 Jose Maria Pedras (78) ; 0-7 Antonio Yauca (81) ; 0-8 Joaquin Santana (85) |
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| 05.10.1965 | Benfica - Stade Dudelange 10-0 (5-0) |
| | | 1-0 Eusebio (9) ; 2-0 Jose Augusto (11) ; 3-0 Jose Augusto (24) ; 4-0 Eusebio (30) ; 5-0 Eusebio (32) ; 6-0 Jose Pinto (49) ; 7-0 Felix Guerreiro (54) ; 8-0 Jose Augusto (60) ; 9-0 Jose Torres (70) ; 10-0 Eusebio (83) |
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