|
| Brøndby  - Frankfurt | 5 - 0 | 1 - 4 | 6 - 4 | | |
| Vejle - Admira | 0 - 1 | 0 - 3 | 0 - 4 | | |
| Anderlecht - Petrolul Ploiesti | 2 - 0 | 2 - 0 | 4 - 0 | | |
| Aston Villa - Banik Ostrava | 3 - 1 | 2 - 1 | 5 - 2 | | |
| Atalanta - Dinamo Zagreb | 0 - 0 | 1 - 1 | 1 - 1 | Atalanta videre på udebanemål | |
| Avenir Beggen - Inter Bratislava | 2 - 1 | 0 - 5 | 2 - 6 | | |
| Chernomorets - Rosenborg | 3 - 1 | 1 - 2 | 4 - 3 | | |
| Derry City - Vitesse | 0 - 1 | 0 - 0 | 0 - 1 | | |
| Dnepr - Hearts | 1 - 1 | 1 - 3 | 2 - 4 | | |
| Dortmund - FC Chemnitz | 2 - 0 | 2 - 0 | 4 - 0 | | |
| Fenerbahce - Guimaraes | 3 - 0 | 3 - 2 | 6 - 2 | | |
| GKS Katowice - PS Turku | 3 - 0 | 1 - 0 | 4 - 0 | | |
| Glenavon - Bordeaux | 0 - 0 | 0 - 2 | 0 - 2 | | |
| Hafnarfjordur - Dundee United | 1 - 3 | 2 - 2 | 3 - 5 | | |
| Hibernians - Partisan Beograd | 0 - 3 | 0 - 2 | 0 - 5 | | |
| IFK Norrköping - FC Köln | 0 - 0 | 1 - 3 | 1 - 3 | | |
| Iraklis Saloniki - Valencia | 0 - 0 | 0 - 2 | 0 - 2 | | |
| Lausanne - Real Sociedad | 3 - 2 | 0 - 1 | 3 - 3 | Sociedad videre på udebanemål | |
| Leverkusen - Twente | 1 - 0 | 1 - 1 | 2 - 1 | | |
| FC Magdeburg - Rovaniemi | 0 - 0 | 1 - 0 | 1 - 0 | | |
| MTK Budapest - FC Luzern | 1 - 1 | 1 - 2 | 2 - 3 | | |
| Partisan Tirana - Universitatea Craiova | 0 - 1 | 0 - 1 | 0 - 2 | | |
| Politehnica Timisoara - Atletico Madrid | 2 - 0 | 0 - 1 | 2 - 1 | | |
| Rapid Wien - Inter | 2 - 1 | 1 - 3 | 3 - 4 | | |
| Roda - AS Monaco | 1 - 3 | 1 - 3 | 2 - 6 | | |
| AS Roma - Benfica | 1 - 0 | 1 - 0 | 2 - 0 | | |
| Royal Antwerpen - Ferencvaros | 0 - 0 | 1 - 3 | 1 - 3 | | |
| Sevilla - PAOK Saloniki | 0 - 0 | 0 - 0 | 0 - 0 | Sevilla vandt 4-3 på straffespark | |
| Slavia Sofia - Omonia Nicosia | 2 - 1 | 2 - 4 | 4 - 5 | | |
| Sporting Lissabon - Mechelen | 1 - 0 | 2 - 2 | 3 - 2 | | |
| Torpedo Moskva - GAIS | 4 - 1 | 1 - 1 | 5 - 2 | | |
| Zaglebie Lublin - Bologna | 0 - 1 | 0 - 1 | 0 - 2 | | |
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