|
| Slavia Prag -  AB | 3 - 0 | 2 - 0 | 5 - 0 | |
| Brøndby - Osijek | 1 - 2 | 0 - 0 | 1 - 2 | |
| AIK Stockholm - Herfølge | 0 - 1 | 1 - 1 | 1 - 2 | |
| CSKA Moskva - Viborg | 0 - 0 | 0 - 1 | 0 - 1 | |
| Alania - Amica Wronki | 0 - 3 | 0 - 2 | 0 - 5 | |
| Alavés - Gaziantepspor | 0 - 0 | 4 - 3 | 4 - 3 | |
| Antalyaspor - Werder Bremen | 2 - 0 | 0 - 6 | 2 - 6 | |
| FC Basel - Brann | 3 - 2 | 4 - 4 | 7 - 6 | |
| Bohemians - Kaiserslautern | 1 - 3 | 1 - 0 | 2 - 3 | |
| Club Brugge - Apoel Nicosia | 2 - 0 | 1 - 0 | 3 - 0 | |
| Celta Vigo - Rijeka | 0 - 0 | 1 - 0 | 1 - 0 | |
| Celtic - HJK Helsinki | 2 - 0 | 1 - 2 | 3 - 2 | |
| Chelsea - St. Gallen | 1 - 0 | 0 - 2 | 1 - 2 | |
| CSKA Sofia - MTK Hungaria | 1 - 2 | 1 - 0 | 2 - 2 | MTK videre på udebanemål | |
| Dunaferr - Feyenoord | 0 - 1 | 1 - 3 | 1 - 4 | |
| Gueugnon - Iraklis Saloniki | 0 - 0 | 0 - 1 | 0 - 1 | |
| Halmstad - Benfica | 2 - 1 | 2 - 2 | 4 - 3 | |
| IFK Norrköping - Slovan Liberec | 2 - 2 | 1 - 2 | 3 - 4 | |
| AA Gent - Ajax | 0 - 6 | 0 - 3 | 0 - 9 | |
| FC Kosice - Grazer AK | 2 - 3 | 0 - 0 | 2 - 3 | |
| Kryvbas - Nantes | 0 - 1 | 0 - 5 | 0 - 6 | |
| Lausanne - Torpedo Moskva | 3 - 2 | 2 - 0 | 5 - 2 | |
| Leicester City - Røde Stjerne Beograd | 1 - 1 | 1 - 3 | 2 - 4 | |
| Lierse - Bordeaux | 0 - 0 | 1 - 5 | 1 - 5 | |
| Lillestrøm - Dynamo Moskva | 3 - 1 | 1 - 2 | 4 - 3 | |
| Lokomotiv Moskva - Neftochimik | 4 - 2 | 0 - 0 | 4 - 2 | |
| Molde - Rayo Vallecano | 0 - 1 | 1 - 1 | 1 - 2 | |
| Napredak - OFI Kreta | 0 - 0 | 0 - 6 | 0 - 6 | |
| HIT Gorica - AS Roma | 1 - 4 | 0 - 7 | 1 - 11 | |
| Olimpija Ljubljana - Espanyol | 2 - 1 | 0 - 2 | 2 - 3 | |
| PAOK Saloniki - Beitar Jerusalem | 3 - 1 | 3 - 3 | 6 - 4 | |
| Partisan Beograd - FC Porto | 1 - 1 | 0 - 1 | 1 - 2 | |
| Petra Drnovice - 1860 München | 0 - 0 | 0 - 1 | 0 - 1 | |
| Pobeda - Parma | 0 - 2 | 0 - 4 | 0 - 6 | |
| Polonia Warszawa - Udinese | 0 - 1 | 0 - 2 | 0 - 3 | |
| Rapid Bukarest - Liverpool | 0 - 1 | 0 - 0 | 0 - 1 | |
| Rapid Wien - Órgryte | 3 - 0 | 1 - 1 | 4 - 1 | |
| Roda - Inter Bratislava | 0 - 2 | 1 - 2 | 1 - 4 | |
| Ruch Chorzow - Inter | 0 - 3 | 1 - 4 | 1 - 7 | |
| Slovan Bratislava - Dinamo Zagreb | 0 - 3 | 1 - 1 | 1 - 4 | |
| Stuttgart - Hearts | 1 - 0 | 2 - 3 | 3 - 3 | Stuttgart videre på udebanemål | |
| Tirol - Fiorentina | 3 - 1 | 2 - 2 | 5 - 3 | |
| Vasas Budapest - AEK Athen | 2 - 2 | 0 - 2 | 2 - 4 | |
| Vitesse - Maccabi Haifa | 3 - 0 | 1 - 2 | 4 - 2 | |
| Vorskla Poltava - Boavista | 1 - 2 | 1 - 2 | 2 - 4 | |
| Real Zaragoza - Wisla Krakow | 4 - 1 | 1 - 4 | 5 - 5 | Wisla vandt 4-3 på straffe | |
| Zimbru Chisinau - Hertha Berlin | 1 - 2 | 0 - 2 | 1 - 4 | |
| FC Zürich - Genk | 1 - 2 | 0 - 2 | 1 - 4 | |
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